Index

A

atom (MopacSystem attribute), [1]

B

BlockToXyz() (in module pymopac.helpers) bond_atom (MopacProperties attribute), [1]

bond_index (MopacProperties attribute), [1] bond_order (MopacProperties attribute), [1]

C

calculate_frequencies() (in module pymopac.API) calculate_mozyme_frequencies() (in module pymopac.API) calculate_mozyme_scf() (in module pymopac.API) calculate_scf() (in module pymopac.API) charge (MopacProperties attribute), [1] (MopacSystem attribute), [1] checkOverlap() (in module pymopac.helpers)

cocc (MozymeState attribute), [1] cocc_dim (MozymeState attribute), [1] coord (MopacSystem attribute), [1] coord_deriv (MopacProperties attribute), [1] coord_update (MopacProperties attribute), [1] cvir (MozymeState attribute), [1] cvir_dim (MozymeState attribute), [1]

D

dipole (MopacProperties attribute), [1]

disp (MopacProperties attribute), [1]

E

epsilon (MopacSystem attribute), [1]

error_msg (MopacProperties attribute), [1]

F

find_binaries_in_path() (in module pymopac.helpers)

float_checker() (in module pymopac.helpers) freq (MopacProperties attribute), [1]

G

geoToXyz() (MopacInput method), [1] get_mopac() (in module pymopac), [1] (in module pymopac.helpers)

get_version_string() (in module pymopac.helpers) getAuxResult() (MopacInput method), [1] getInpFile() (MopacInput method), [1] getOutResult() (MopacInput method), [1]

H

heat (MopacProperties attribute), [1]

I

ibonds (MozymeState attribute), [1] icocc (MozymeState attribute), [1] icocc_dim (MozymeState attribute), [1]

icvir (MozymeState attribute), [1] icvir_dim (MozymeState attribute), [1] iorbs (MozymeState attribute), [1]

K

keys() (MopacOutput method), [1]

L

lattice (MopacSystem attribute), [1]

lattice_deriv (MopacProperties attribute), [1] lattice_update (MopacProperties attribute), [1]

M

max_time (MopacSystem attribute), [1] model (MopacSystem attribute), [1] module pymopac, [1] pymopac.API pymopac.helpers mol_to_system() (in module pymopac.API)

MopacInput (class in pymopac), [1] MopacOutput (class in pymopac), [1] MopacProperties (class in pymopac.API) MopacState (class in pymopac.API) MopacSystem (class in pymopac.API) MozymeState (class in pymopac.API) mpack (MopacState attribute), [1]

N

natom (MopacSystem attribute), [1] natom_move (MopacSystem attribute), [1] nbonds (MozymeState attribute), [1] nce (MozymeState attribute), [1] ncf (MozymeState attribute), [1]

nerror (MopacProperties attribute), [1] nlattice (MopacSystem attribute), [1] nlattice_move (MopacSystem attribute), [1] noccupied (MozymeState attribute), [1] numat (MozymeState attribute), [1] nvirtual (MozymeState attribute), [1]

O

optimize_geometry() (in module pymopac.API)

optimize_mozyme_geometry() (in module pymopac.API) optional_imports() (in module pymopac.helpers)

P

pa (MopacState attribute), [1] pb (MopacState attribute), [1] pressure (MopacSystem attribute), [1] pymopac module, [1]

pymopac.API module pymopac.helpers module

R

run() (MopacInput method), [1]

run_from_file() (in module pymopac.API)

S

silentRun() (MopacInput method), [1] spin (MopacSystem attribute), [1]

stream_run() (MopacInput method), [1] stress (MopacProperties attribute), [1] system_to_mol() (in module pymopac.API)

T

tolerance (MopacSystem attribute), [1]

toMol() (MopacOutput method), [1]

U

uhf (MopacState attribute), [1]

V

verboseRun() (MopacInput method), [1]

X

xyz_identifier() (in module pymopac.helpers)

xyz_line_checker() (in module pymopac.helpers)